* @param c2
*/
int replace(char c1, char c2);
-
- /**
- * Adjusts position and extent of features to allow for cut of the specified
- * (inclusive) column range. Returns a list of {originalFeature,
- * amendedFeature} for
- * <ul>
- * <li>features that have been deleted (as within the cut) - amendedFeature is
- * null</li>
- * <li>truncated features (as overlapping or spanning the cut)</li>
- * </ul>
- * Contact features that overlap the cut region are deleted. Contact features
- * that enclose the cut region are shortened.
- *
- * @param fromColumn
- * @param toColumn
- * @return
- */
- List<SequenceFeature[]> adjustFeatures(int fromColumn, int toColumn);
}