*/
package jalview.datamodel;
-import jalview.api.DBRefEntryI;
-
import java.util.List;
import java.util.Vector;
* DOCUMENT ME!
*
* @param i
- * DOCUMENT ME!
+ * alignment column number
* @param c
- * DOCUMENT ME!
+ * character to insert
*/
public void insertCharAt(int i, char c);
/**
- * DOCUMENT ME!
+ * insert given character at alignment column position
*
* @param position
- * DOCUMENT ME!
+ * alignment column number
+ * @param count
+ * length of insert
* @param ch
- * DOCUMENT ME!
+ * character to insert
*/
public void insertCharAt(int position, int count, char ch);
*/
public PDBEntry getPDBEntry(String pdbId);
- /**
- * Set the distinct source database, and accession number from which a
- * sequence and its start-end data were derived from. This is very important
- * for SIFTS mappings and must be set prior to performing SIFTS mapping.
- *
- * @param dbRef
- * the source dbRef for the sequence
- */
- public void setSourceDBRef(DBRefEntryI dbRef);
/**
- * Get the distinct source database, and accession number from which a
- * sequence and its start-end data were derived from.
+ * Get all primary database/accessions for this sequence's data. These
+ * DBRefEntry are expected to resolve to a valid record in the associated
+ * external database, either directly or via a provided 1:1 Mapping.
*
- * @return
+ * @return just the primary references (if any) for this sequence, or an empty
+ * list
*/
- public DBRefEntryI getSourceDBRef();
+ public List<DBRefEntry> getPrimaryDBRefs();
}