/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
- * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
*
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.datamodel;
+/**
+ * Data model for the sequence returned by a Uniprot query
+ *
+ * @see uniprot_mapping.xml
+ */
public class UniprotSequence
{
+ private String _content = "";
+
/**
- * internal content storage
+ * Sets the content string, omitting any space characters
+ *
+ * @param seq
*/
- private java.lang.String _content = "";
-
public void setContent(String seq)
{
- StringBuffer sb = new StringBuffer();
- for (int i = 0; i < seq.length(); i++)
+ if (seq != null)
{
- if (seq.charAt(i) != ' ')
+ StringBuilder sb = new StringBuilder(seq.length());
+ for (int i = 0; i < seq.length(); i++)
{
- sb.append(seq.charAt(i));
+ if (seq.charAt(i) != ' ')
+ {
+ sb.append(seq.charAt(i));
+ }
}
+ _content = sb.toString();
}
- _content = sb.toString();
}
public String getContent()