JAL-3725 restrict mapped virtual feature location to mapped region

[jalview.git] / src / jalview / datamodel / VisibleRowsCollection.java

diff --git a/src/jalview/datamodel/VisibleRowsCollection.java b/src/jalview/datamodel/VisibleRowsCollection.java
index 98153f9..fd7cf47 100644 (file)
--- a/src/jalview/datamodel/VisibleRowsCollection.java
+++ b/src/jalview/datamodel/VisibleRowsCollection.java
@@ -54,7 +54,12 @@ public class VisibleRowsCollection implements AlignmentRowsCollectionI
   @Override
   public SequenceI getSequence(int seq)
   {
-    return alignment.getSequenceAt(seq);
+    return alignment.getSequenceAtAbsoluteIndex(seq);
   }
-}
 
+  @Override
+  public boolean hasHidden()
+  {
+    return false;
+  }
+}