JAL-34 - quick hack to see how we can do alignment comparison for splitframes linking...

[jalview.git] / src / jalview / datamodel / annotations / AnnotationRowBuilder.java

diff --git a/src/jalview/datamodel/annotations/AnnotationRowBuilder.java b/src/jalview/datamodel/annotations/AnnotationRowBuilder.java
index b802612..2dec59c 100644 (file)
--- a/src/jalview/datamodel/annotations/AnnotationRowBuilder.java
+++ b/src/jalview/datamodel/annotations/AnnotationRowBuilder.java
@@ -1,6 +1,27 @@
-package jalview.datamodel.annotations.AnnotationRowBuilder;
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.datamodel.annotations;
 
 import jalview.datamodel.Annotation;
+import jalview.structure.StructureImportSettings.TFType;
 
 public class AnnotationRowBuilder
 {
@@ -13,6 +34,22 @@ public class AnnotationRowBuilder
 
   boolean hasMinMax = false;
 
+  /**
+   * the type of temperature factor plot (if it is one)
+   */
+  // private TFType tfType = TFType.DEFAULT;
+  private TFType tfType = null;
+
+  public void setTFType(TFType t)
+  {
+    tfType = t;
+  }
+
+  public TFType getTFType()
+  {
+    return tfType;
+  }
+
   public String getName()
   {
     return name;
@@ -80,6 +117,12 @@ public class AnnotationRowBuilder
     name = string;
   }
 
+  public AnnotationRowBuilder(String name, float min, float max, TFType tft)
+  {
+    this(name, min, max);
+    setTFType(tft);
+  }
+
   public AnnotationRowBuilder(String name, float min, float max)
   {
     this(name);