String sequenceVersion;
+ String dataClass;
+
String moleculeType;
String topology;
String sequenceLength;
- String taxDivision;
+ String taxonomicDivision;
+
+ String description;
- String desc;
+ String firstPublicDate;
- String rCreated;
+ String firstPublicRelease;
- String rLastUpdated;
+ String lastUpdatedDate;
- String lastUpdated;
+ String lastUpdatedRelease;
Vector<String> keywords;
}
/**
- * @return the desc
- */
- public String getDesc()
- {
- return desc;
- }
-
- /**
- * @param desc
- * the desc to set
- */
- public void setDesc(String desc)
- {
- this.desc = desc;
- }
-
- /**
* @return the features
*/
public Vector<EmblFeature> getFeatures()
}
/**
- * @return the lastUpdated
- */
- public String getLastUpdated()
- {
- return lastUpdated;
- }
-
- /**
- * @param lastUpdated
- * the lastUpdated to set
- */
- public void setLastUpdated(String lastUpdated)
- {
- this.lastUpdated = lastUpdated;
- }
-
- /**
- * @return the releaseCreated
- */
- public String getRCreated()
- {
- return rCreated;
- }
-
- /**
- * @param releaseCreated
- * the releaseCreated to set
- */
- public void setRCreated(String releaseCreated)
- {
- this.rCreated = releaseCreated;
- }
-
- /**
- * @return the releaseLastUpdated
- */
- public String getRLastUpdated()
- {
- return rLastUpdated;
- }
-
- /**
- * @param releaseLastUpdated
- * the releaseLastUpdated to set
- */
- public void setRLastUpdated(String releaseLastUpdated)
- {
- this.rLastUpdated = releaseLastUpdated;
- }
-
- /**
* @return the sequence
*/
public EmblSequence getSequence()
}
/**
- * @return the taxDivision
- */
- public String getTaxDivision()
- {
- return taxDivision;
- }
-
- /**
- * @param taxDivision
- * the taxDivision to set
- */
- public void setTaxDivision(String taxDivision)
- {
- this.taxDivision = taxDivision;
- }
-
- /**
- * @return the entry version
- */
- public String getEntryVersion()
- {
- return entryVersion;
- }
-
- /**
- * @param version
- * the version to set
- */
- public void setEntryVersion(String version)
- {
- this.entryVersion = version;
- }
-
- /**
* Recover annotated sequences from EMBL file
*
* @param sourceDb
{
SequenceI dna = new Sequence(sourceDb + "|" + accession,
sequence.getSequence());
- dna.setDescription(desc);
+ dna.setDescription(description);
DBRefEntry retrievedref = new DBRefEntry(sourceDb,
getSequenceVersion(), accession);
dna.addDBRef(retrievedref);
this.sequenceVersion = sequenceVersion;
}
+ public String getSequenceLength()
+ {
+ return sequenceLength;
+ }
+
+ public void setSequenceLength(String sequenceLength)
+ {
+ this.sequenceLength = sequenceLength;
+ }
+
+ public String getEntryVersion()
+ {
+ return entryVersion;
+ }
+
+ public void setEntryVersion(String entryVersion)
+ {
+ this.entryVersion = entryVersion;
+ }
+
public String getMoleculeType()
{
return moleculeType;
this.topology = topology;
}
- public String getSequenceLength()
+ public String getTaxonomicDivision()
{
- return sequenceLength;
+ return taxonomicDivision;
}
- public void setSequenceLength(String sequenceLength)
+ public void setTaxonomicDivision(String taxonomicDivision)
{
- this.sequenceLength = sequenceLength;
+ this.taxonomicDivision = taxonomicDivision;
+ }
+
+ public String getDescription()
+ {
+ return description;
+ }
+
+ public void setDescription(String description)
+ {
+ this.description = description;
+ }
+
+ public String getFirstPublicDate()
+ {
+ return firstPublicDate;
+ }
+
+ public void setFirstPublicDate(String firstPublicDate)
+ {
+ this.firstPublicDate = firstPublicDate;
+ }
+
+ public String getFirstPublicRelease()
+ {
+ return firstPublicRelease;
+ }
+
+ public void setFirstPublicRelease(String firstPublicRelease)
+ {
+ this.firstPublicRelease = firstPublicRelease;
+ }
+
+ public String getLastUpdatedDate()
+ {
+ return lastUpdatedDate;
+ }
+
+ public void setLastUpdatedDate(String lastUpdatedDate)
+ {
+ this.lastUpdatedDate = lastUpdatedDate;
}
- public String getrCreated()
+ public String getLastUpdatedRelease()
{
- return rCreated;
+ return lastUpdatedRelease;
}
- public void setrCreated(String rCreated)
+ public void setLastUpdatedRelease(String lastUpdatedRelease)
{
- this.rCreated = rCreated;
+ this.lastUpdatedRelease = lastUpdatedRelease;
}
- public String getrLastUpdated()
+ public String getDataClass()
{
- return rLastUpdated;
+ return dataClass;
}
- public void setrLastUpdated(String rLastUpdated)
+ public void setDataClass(String dataClass)
{
- this.rLastUpdated = rLastUpdated;
+ this.dataClass = dataClass;
}
}