JAL-3130 de-multi-release-jar.sh Script to make multi-release jar file single release.

[jalview.git] / src / jalview / datamodel / xdb / embl / EmblFeature.java

diff --git a/src/jalview/datamodel/xdb/embl/EmblFeature.java b/src/jalview/datamodel/xdb/embl/EmblFeature.java
index 975471a..51d740b 100644 (file)
--- a/src/jalview/datamodel/xdb/embl/EmblFeature.java
+++ b/src/jalview/datamodel/xdb/embl/EmblFeature.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,22 +20,29 @@
  */
 package jalview.datamodel.xdb.embl;
 
+import jalview.datamodel.DBRefEntry;
+
 import java.util.Vector;
 
+/**
+ * Data model for a <feature> element returned from an EMBL query reply
+ * 
+ * @see embl_mapping.xml
+ */
 public class EmblFeature
 {
   String name;
 
-  Vector dbRefs;
+  Vector<DBRefEntry> dbRefs;
 
-  Vector qualifiers;
+  Vector<Qualifier> qualifiers;
 
-  Vector locations;
+  String location;
 
   /**
    * @return the dbRefs
    */
-  public Vector getDbRefs()
+  public Vector<DBRefEntry> getDbRefs()
   {
     return dbRefs;
   }
@@ -44,26 +51,25 @@ public class EmblFeature
    * @param dbRefs
    *          the dbRefs to set
    */
-  public void setDbRefs(Vector dbRefs)
+  public void setDbRefs(Vector<DBRefEntry> dbRefs)
   {
     this.dbRefs = dbRefs;
   }
 
   /**
-   * @return the locations
+   * @return the location
    */
-  public Vector getLocations()
+  public String getLocation()
   {
-    return locations;
+    return location;
   }
 
   /**
-   * @param locations
-   *          the locations to set
+   * @param loc
    */
-  public void setLocations(Vector locations)
+  public void setLocation(String loc)
   {
-    this.locations = locations;
+    this.location = loc;
   }
 
   /**
@@ -86,7 +92,7 @@ public class EmblFeature
   /**
    * @return the qualifiers
    */
-  public Vector getQualifiers()
+  public Vector<Qualifier> getQualifiers()
   {
     return qualifiers;
   }
@@ -95,7 +101,7 @@ public class EmblFeature
    * @param qualifiers
    *          the qualifiers to set
    */
-  public void setQualifiers(Vector qualifiers)
+  public void setQualifiers(Vector<Qualifier> qualifiers)
   {
     this.qualifiers = qualifiers;
   }