indicate the database id source associated with the sequences being submitted.

[jalview.git] / src / jalview / datamodel / xdb / embl / Qualifier.java

diff --git a/src/jalview/datamodel/xdb/embl/Qualifier.java b/src/jalview/datamodel/xdb/embl/Qualifier.java
index 8fae059..0ef5274 100644 (file)
--- a/src/jalview/datamodel/xdb/embl/Qualifier.java
+++ b/src/jalview/datamodel/xdb/embl/Qualifier.java
@@ -1,31 +1,109 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * 
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ */
 package jalview.datamodel.xdb.embl;
 
-public class Qualifier {
-    String name;
-    String value;
-    /**
-     * @return the name
-     */
-    public String getName() {
-        return name;
+public class Qualifier
+{
+  String name;
+
+  String[] values;
+
+  String[] evidence;
+
+  /**
+   * @return the name
+   */
+  public String getName()
+  {
+    return name;
+  }
+
+  /**
+   * @param name
+   *                the name to set
+   */
+  public void setName(String name)
+  {
+    this.name = name;
+  }
+
+  /**
+   * @return the values
+   */
+  public String[] getValues()
+  {
+    return values;
+  }
+
+  /**
+   * @param values
+   *                the values to set
+   */
+  public void setValues(String[] values)
+  {
+    this.values = values;
+  }
+
+  public void addEvidence(String qevidence)
+  {
+    if (evidence == null)
+    {
+      evidence = new String[1];
     }
-    /**
-     * @param name the name to set
-     */
-    public void setName(String name) {
-        this.name = name;
+    else
+    {
+      String[] temp = new String[evidence.length + 1];
+      System.arraycopy(evidence, 0, temp, 0, evidence.length);
+      evidence = temp;
     }
-    /**
-     * @return the value
-     */
-    public String getValue() {
-        return value;
+    evidence[evidence.length - 1] = qevidence;
+  }
+
+  public void addValues(String value)
+  {
+    if (values == null)
+    {
+      values = new String[1];
     }
-    /**
-     * @param value the value to set
-     */
-    public void setValue(String value) {
-        this.value = value;
+    else
+    {
+      String[] temp = new String[values.length + 1];
+      System.arraycopy(values, 0, temp, 0, values.length);
+      values = temp;
     }
-    
+    values[values.length - 1] = value;
+  }
+
+  /**
+   * @return the evidence
+   */
+  public String[] getEvidence()
+  {
+    return evidence;
+  }
+
+  /**
+   * @param evidence
+   *                the evidence to set
+   */
+  public void setEvidence(String[] evidence)
+  {
+    this.evidence = evidence;
+  }
 }