JAL-2826 added action performed for hiding collapsed sequences

[jalview.git] / src / jalview / ext / archaeopteryx / AptxFrame.java

diff --git a/src/jalview/ext/archaeopteryx/AptxFrame.java b/src/jalview/ext/archaeopteryx/AptxFrame.java
index 6cecd28..e321c90 100644 (file)
--- a/src/jalview/ext/archaeopteryx/AptxFrame.java
+++ b/src/jalview/ext/archaeopteryx/AptxFrame.java
@@ -5,6 +5,7 @@ import jalview.ext.treeviewer.TreeControlsI;
 import jalview.ext.treeviewer.TreeFrameI;
 import jalview.ext.treeviewer.TreeI;
 import jalview.ext.treeviewer.TreePanelI;
+import jalview.ext.treeviewer.TreeViewerBindingI;
 import jalview.ext.treeviewer.TreeViewerUtils;
 import jalview.gui.Desktop;
 import jalview.gui.EPSOptions;
@@ -43,6 +44,8 @@ public class AptxFrame implements TreeFrameI
 {
   private final MainFrame aptxFrame;
 
+  private TreeViewerBindingI viewBinding;
+
   private TreePanelI aptxPanel;
 
   private TreeControlsI aptxControls;
@@ -142,18 +145,58 @@ public class AptxFrame implements TreeFrameI
       else if (menu.getText().contains("View"))
       {
         menu.addSeparator();
+
         JMenuItem sortByTree = new JMenuItem("Sort alignment by tree");
         JMenuItem refreshJalview = new JMenuItem(
                 "Filter alignment to show only currently visible sequences");
+        JMenuItem hideCollapsed = new JMenuItem(
+                "Hide sequences of collapsed nodes");
 
         refreshJalview.setFont(menu.getFont());
+        refreshJalview.addActionListener(new ActionListener() {
+          
+          @Override
+          public void actionPerformed(ActionEvent e) {
+            TreeViewerBindingI bindingManager = TreeViewerUtils
+                    .getActiveTreeViews().get(AptxFrame.this);
+            bindingManager.actionPerformed(e);
+          }
+        });
+                
+        sortByTree.addActionListener(new ActionListener()
+        {
+
+          @Override
+          public void actionPerformed(ActionEvent e)
+          {
+            TreeViewerBindingI bindingManager = TreeViewerUtils
+                    .getActiveTreeViews().get(AptxFrame.this);
+            bindingManager.sortByTree_actionPerformed();
+
+          }
+
+        });
+
+        hideCollapsed.addActionListener(new ActionListener()
+        {
+
+          @Override
+          public void actionPerformed(ActionEvent e)
+          {
+            TreeViewerBindingI bindingManager = TreeViewerUtils
+                    .getActiveTreeViews().get(AptxFrame.this);
+            bindingManager.hideCollapsedSequences_actionPerformed();
+            
+          }
+
+        });
 
         menu.add(sortByTree);
         menu.add(refreshJalview);
+        menu.add(hideCollapsed);
 
         sortByTree.setFont(menu.getFont());
-        refreshJalview
-                .addActionListener(TreeViewerUtils.getActiveTreeViews().get(this));
+
 
 
       }
@@ -241,7 +284,7 @@ public class AptxFrame implements TreeFrameI
   }
 
   @Override
-  public void checkMultipleTrees()
+  public void enableMultipleTrees()
   {
     aptxFrame.activateSaveAllIfNeeded();
 
@@ -393,4 +436,31 @@ public class AptxFrame implements TreeFrameI
 
   }
 
+  @Override
+  public TreeViewerBindingI getViewBinding()
+  {
+    return viewBinding;
+  }
+
+  @Override
+  public void setViewBinding(TreeViewerBindingI alignmentBinding)
+  {
+    viewBinding = alignmentBinding;
+  }
+
+
+  @Override
+  public void setMaximumSize(Dimension maximumSize)
+  {
+    aptxFrame.setMaximumSize(maximumSize);
+
+  }
+
+  @Override
+  public void setPreferredSize(Dimension preferredSize)
+  {
+    aptxFrame.setPreferredSize(preferredSize);
+
+  }
+
 }
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