JAL-2805 added nexus specific parser settings

[jalview.git] / src / jalview / ext / archaeopteryx / AptxInit.java

diff --git a/src/jalview/ext/archaeopteryx/AptxInit.java b/src/jalview/ext/archaeopteryx/AptxInit.java
index dd21877..f8347bd 100644 (file)
--- a/src/jalview/ext/archaeopteryx/AptxInit.java
+++ b/src/jalview/ext/archaeopteryx/AptxInit.java
@@ -16,6 +16,7 @@ import jalview.viewmodel.AlignmentViewport;
 import java.io.File;
 import java.io.FileNotFoundException;
 import java.io.IOException;
+import java.io.InputStream;
 import java.net.MalformedURLException;
 import java.net.URL;
 
@@ -44,9 +45,13 @@ import org.forester.util.ForesterUtil;
  */
 public final class AptxInit
 {
+  public final static InputStream CONFIG_LOC = AptxInit.class
+
+          .getResourceAsStream("/_aptx_jalview_configuration_file.txt");
+
   public final static Configuration APTX_CONFIG = new Configuration(
-          "_aptx_jalview_configuration_file",
-            false, false, false);
+          CONFIG_LOC,
+          false, false);
   // static
   // {
   // APTX_CONFIG.setBaseFontFamilyName(
@@ -69,11 +74,6 @@ public final class AptxInit
   private final static NHXParser.TAXONOMY_EXTRACTION TAXONOMY_EXTRACTION = APTX_CONFIG
           .getTaxonomyExtraction();
 
-
-
-
-
-
   public static TreeFrameI createInstanceFromCalculation(
           final TreeBuilder calculatedTree)
   {