{
public static MainFrame createInstance(Phylogeny[] aptxTrees)
{
- return createAptxFrame(aptxTrees);
+ return createBoundAptxFrame(aptxTrees);
}
{
Phylogeny[] aptxTrees = { aptxTree }; // future possibility to load in
// several trees simultaneously
- return createAptxFrame(aptxTrees);
+ return createBoundAptxFrame(aptxTrees);
}
public static MainFrame createInstance(
TreeBuilder calculatedTree)
{
- ArchaeopteryxTreeBuilder aptxTreeBuilder = new ArchaeopteryxTreeBuilder();
- Phylogeny aptxTree = aptxTreeBuilder.buildAptxTree(calculatedTree);
+ ArchaeopteryxTreeConverter aptxTreeBuilder = new ArchaeopteryxTreeConverter(
+ calculatedTree);
+ Phylogeny aptxTree = aptxTreeBuilder.buildAptxTree();
Phylogeny[] aptxTrees = { aptxTree }; // future possibility to load in
// several trees simultaneously
- return createAptxFrame(aptxTrees);
+ return createBoundAptxFrame(aptxTrees);
}
- private static MainFrame createAptxFrame(Phylogeny[] aptxTrees)
+ private static MainFrame createBoundAptxFrame(Phylogeny[] aptxTrees)
{
MainFrame aptxApp = Archaeopteryx.createApplication(aptxTrees,
"_aptx_jalview_configuration_file", null);