JAL-1953 moved now-generic methods outside of Aptx package

[jalview.git] / src / jalview / ext / archaeopteryx / JalviewBinding.java

diff --git a/src/jalview/ext/archaeopteryx/JalviewBinding.java b/src/jalview/ext/archaeopteryx/JalviewBinding.java
index 6ad0b60..54b9225 100644 (file)
--- a/src/jalview/ext/archaeopteryx/JalviewBinding.java
+++ b/src/jalview/ext/archaeopteryx/JalviewBinding.java
@@ -14,6 +14,7 @@ import jalview.ext.treeviewer.TreeI;
 import jalview.ext.treeviewer.TreeNodeI;
 import jalview.ext.treeviewer.TreePanelI;
 import jalview.ext.treeviewer.TreeViewerBindingI;
+import jalview.ext.treeviewer.TreeViewerUtils;
 import jalview.ext.treeviewer.LoadedTreeSequenceAssociation;
 import jalview.gui.AlignViewport;
 import jalview.gui.AlignmentPanel;
@@ -129,7 +130,7 @@ public final class JalviewBinding
       @Override
       public void internalFrameClosed(InternalFrameEvent e)
       {
-        AptxInit.getAllAptxFrames().remove(aptxFrame);
+        TreeViewerUtils.getActiveTreeViews().remove(aptxFrame);
         ssm.removeSelectionListener(JalviewBinding.this);
       }
 
@@ -182,7 +183,7 @@ public final class JalviewBinding
     bindAptxNodes.associateLeavesToSequences();
     sequencesBoundToNodes = bindAptxNodes.getAlignmentWithNodes();
     nodesBoundToSequences = bindAptxNodes.getNodesWithAlignment();
-    AptxInit.bindNodesToJalviewSequences(aptxFrame, parentAvport,
+    TreeViewerUtils.associateNodesWithJalviewSequences(aptxFrame, parentAvport,
             sequencesBoundToNodes, nodesBoundToSequences);