JAL-281 option pane with error handling for selecting an URL

[jalview.git] / src / jalview / ext / archaeopteryx / LoadedTreeAssociation.java

diff --git a/src/jalview/ext/archaeopteryx/LoadedTreeAssociation.java b/src/jalview/ext/archaeopteryx/LoadedTreeAssociation.java
index 3255c69..c869cd5 100644 (file)
--- a/src/jalview/ext/archaeopteryx/LoadedTreeAssociation.java
+++ b/src/jalview/ext/archaeopteryx/LoadedTreeAssociation.java
@@ -4,7 +4,7 @@ import jalview.analysis.SequenceIdMatcher;
 import jalview.datamodel.SequenceI;
 import jalview.ext.forester.DataConversions;
 import jalview.ext.treeviewer.ExternalLoadedTreeAssociationI;
-import jalview.ext.treeviewer.ExternalTreeBuilderI;
+import jalview.util.MappingUtils;
 
 import java.util.HashMap;
 import java.util.List;
@@ -67,9 +67,9 @@ public class LoadedTreeAssociation
                 .createForesterSequence(nodeSequence, true);
         treeNode.getNodeData().setSequence(foresterNodeSeq);
 
-        ExternalTreeBuilderI.putWithDuplicationCheck(alignmentWithNodes,
+        MappingUtils.putWithDuplicationCheck(alignmentWithNodes,
                 nodeSequence, treeNode);
-        ExternalTreeBuilderI.putWithDuplicationCheck(nodesWithAlignment,
+        MappingUtils.putWithDuplicationCheck(nodesWithAlignment,
                 treeNode, nodeSequence);
 
 
@@ -79,6 +79,8 @@ public class LoadedTreeAssociation
 
   }
 
+
+
   public Map<SequenceI, PhylogenyNode> getAlignmentWithNodes()
   {
     return alignmentWithNodes;