JAL-2805 removed unused Aptx instance creation code

[jalview.git] / src / jalview / ext / archaeopteryx / TreeNode.java

diff --git a/src/jalview/ext/archaeopteryx/TreeNode.java b/src/jalview/ext/archaeopteryx/TreeNode.java
index 07c8d95..b43e9b4 100644 (file)
--- a/src/jalview/ext/archaeopteryx/TreeNode.java
+++ b/src/jalview/ext/archaeopteryx/TreeNode.java
@@ -1,6 +1,7 @@
 package jalview.ext.archaeopteryx;
 
 import jalview.datamodel.SequenceI;
+import jalview.ext.forester.DataConversions;
 import jalview.ext.treeviewer.TreeNodeI;
 
 import java.awt.Color;
@@ -28,6 +29,11 @@ public class TreeNode implements TreeNodeI
   private TreeNode(PhylogenyNode aptxNode)
   {
     node = aptxNode;
+    if (aptxNode.getNodeData().getSequence() != null)
+    {
+    nodeSeq = DataConversions
+              .createJalviewSequence(aptxNode);
+    }
     originalNodes.put(aptxNode, this);
     wrappedNodes.put(this, aptxNode);
 
@@ -85,7 +91,6 @@ public class TreeNode implements TreeNodeI
   public SequenceI getSequence()
   {
     return nodeSeq;
-    // ideally this would return a converted node.getNodeData().getSequence()
   }
 
   @Override