public class EnsemblCdna extends EnsemblSeqProxy
{
- // TODO modify to accept other species e.g. ENSMUSPnnn
+ /*
+ * accepts ENST or ENSTG with 11 digits
+ * or ENSMUST or similar for other species
+ * or CCDSnnnnn.nn with at least 3 digits
+ */
private static final Regex ACCESSION_REGEX = new Regex(
- "(ENST|ENSG|CCDS)[0-9.]{3,}$");
+ "(ENS([A-Z]{3}|)[TG][0-9]{11}$)" + "|" + "(CCDS[0-9.]{3,}$)");
/*
* fetch exon features on genomic sequence (to identify the cdna regions)