Merge branch 'develop' into update_212_Dec_merge_with_21125_chamges

[jalview.git] / src / jalview / ext / ensembl / EnsemblCds.java

diff --git a/src/jalview/ext/ensembl/EnsemblCds.java b/src/jalview/ext/ensembl/EnsemblCds.java
index 8f13d99..07c3431 100644 (file)
--- a/src/jalview/ext/ensembl/EnsemblCds.java
+++ b/src/jalview/ext/ensembl/EnsemblCds.java
@@ -93,7 +93,7 @@ public class EnsemblCds extends EnsemblSeqProxy
   @Override
   protected boolean retainFeature(SequenceFeature sf, String accessionId)
   {
-    if (SequenceOntologyFactory.getInstance().isA(sf.getType(),
+    if (SequenceOntologyFactory.getSequenceOntology().isA(sf.getType(),
             SequenceOntologyI.CDS))
     {
       return false;
@@ -116,7 +116,7 @@ public class EnsemblCds extends EnsemblSeqProxy
     for (SequenceFeature sf : sfs)
     {
       String parentFeature = (String) sf.getValue(PARENT);
-      if ( accId.equals(parentFeature))
+      if (accId.equals(parentFeature))
       {
         result.add(sf);
       }