JAL-2738 unit test for reverse strand gene

[jalview.git] / src / jalview / ext / ensembl / EnsemblGene.java

diff --git a/src/jalview/ext/ensembl/EnsemblGene.java b/src/jalview/ext/ensembl/EnsemblGene.java
index 45e8e34..5e970b1 100644 (file)
--- a/src/jalview/ext/ensembl/EnsemblGene.java
+++ b/src/jalview/ext/ensembl/EnsemblGene.java
@@ -426,7 +426,7 @@ public class EnsemblGene extends EnsemblSeqProxy
    * @param mapping
    *          the mapping from gene to transcript positions
    */
-  protected void mapTranscriptToChromosome(Sequence transcript,
+  protected void mapTranscriptToChromosome(SequenceI transcript,
           SequenceI gene, MapList mapping)
   {
     GeneLoci loci = gene.getGeneLoci();