JAL-1705 additional tests, validation regexp tweaks, javadoc

[jalview.git] / src / jalview / ext / ensembl / EnsemblGenome.java

diff --git a/src/jalview/ext/ensembl/EnsemblGenome.java b/src/jalview/ext/ensembl/EnsemblGenome.java
index 8238da0..e977e62 100644 (file)
--- a/src/jalview/ext/ensembl/EnsemblGenome.java
+++ b/src/jalview/ext/ensembl/EnsemblGenome.java
@@ -10,7 +10,7 @@ public class EnsemblGenome extends EnsemblSeqProxy
    */
   private static final EnsemblFeatureType[] FEATURES_TO_FETCH = {
       EnsemblFeatureType.transcript, EnsemblFeatureType.exon,
-      EnsemblFeatureType.cds /*, EnsemblFeatureType.variation */};
+      EnsemblFeatureType.cds, EnsemblFeatureType.variation };
 
   public EnsemblGenome()
   {
@@ -20,7 +20,7 @@ public class EnsemblGenome extends EnsemblSeqProxy
   @Override
   public String getDbName()
   {
-    return "ENSEMBL (Genome)";
+    return "ENSEMBL (Genomic)";
   }
 
   @Override
@@ -37,9 +37,10 @@ public class EnsemblGenome extends EnsemblSeqProxy
 
   /**
    * Answers true unless the feature type is 'transcript' (or a sub-type of
-   * transcript in the Sequence Ontology). Transcript features are only
-   * retrieved in order to identify the transcript sequence range, and are
-   * redundant information on the transcript sequence itself.
+   * transcript in the Sequence Ontology), or has a parent other than the given
+   * accession id. Transcript features are only retrieved in order to identify
+   * the transcript sequence range, and are redundant information on the
+   * transcript sequence itself.
    */
   @Override
   protected boolean retainFeature(SequenceFeature sf, String accessionId)