JAL-2105 capture Ensembl data version, check REST version (per domain)

[jalview.git] / src / jalview / ext / ensembl / EnsemblSeqProxy.java

diff --git a/src/jalview/ext/ensembl/EnsemblSeqProxy.java b/src/jalview/ext/ensembl/EnsemblSeqProxy.java
index fb81e66..c86469f 100644 (file)
--- a/src/jalview/ext/ensembl/EnsemblSeqProxy.java
+++ b/src/jalview/ext/ensembl/EnsemblSeqProxy.java
@@ -280,8 +280,8 @@ public abstract class EnsemblSeqProxy extends EnsemblRestClient
         ds.setSourceDBRef(proteinSeq.getSourceDBRef());
 
         Mapping map = new Mapping(ds, mapList);
-        DBRefEntry dbr = new DBRefEntry(getDbSource(), getDbVersion(),
-                proteinSeq.getName(), map);
+        DBRefEntry dbr = new DBRefEntry(getDbSource(),
+                getEnsemblDataVersion(), proteinSeq.getName(), map);
         querySeq.getDatasetSequence().addDBRef(dbr);
         
         /*
@@ -327,7 +327,8 @@ public abstract class EnsemblSeqProxy extends EnsemblRestClient
     /*
      * and add a reference to itself
      */
-    DBRefEntry self = new DBRefEntry(getDbSource(), "0", seq.getName());
+    DBRefEntry self = new DBRefEntry(getDbSource(),
+            getEnsemblDataVersion(), seq.getName());
     seq.addDBRef(self);
   }
 
@@ -386,7 +387,8 @@ public abstract class EnsemblSeqProxy extends EnsemblRestClient
         if (ids.contains(name)
                 || ids.contains(name.replace("ENSP", "ENST")))
         {
-          DBRefUtils.parseToDbRef(sq, DBRefSource.ENSEMBL, "0", name);
+          DBRefUtils.parseToDbRef(sq, getDbSource(),
+                  getEnsemblDataVersion(), name);
         }
       }
       if (alignment == null)