{
private static final String GENE = "gene";
private static final String TYPE = "type";
- private static final String ID = "id";
-
/**
* Constructor given the target domain to fetch data from
*
while (rvals.hasNext())
{
JSONObject val = (JSONObject) rvals.next();
- String id = val.get(ID).toString();
+ String id = val.get(JSON_ID).toString();
String type = val.get(TYPE).toString();
if (id != null && GENE.equals(type))
{
{
for (String query : queries)
{
- for (Species taxon : Species.values())
+ for (Species taxon : Species.getModelOrganisms())
{
- if (taxon.isModelOrganism())
+ URL url = getUrl(query, taxon, GENE);
+ if (url != null)
{
- URL url = getUrl(query, taxon, GENE);
- if (url != null)
+ br = getHttpResponse(url, ids);
+ if (br != null)
{
- br = getHttpResponse(url, ids);
- if (br != null)
+ String geneId = parseSymbolResponse(br);
+ if (geneId != null && !result.contains(geneId))
{
- String geneId = parseSymbolResponse(br);
- System.out.println(url + " returned " + geneId);
- if (geneId != null && !result.contains(geneId))
- {
- result.add(geneId);
- }
+ result.add(geneId);
}
}
}