Merge branch 'develop' into features/JAL-2094_colourInterface

[jalview.git] / src / jalview / ext / ensembl / EnsemblSymbol.java

diff --git a/src/jalview/ext/ensembl/EnsemblSymbol.java b/src/jalview/ext/ensembl/EnsemblSymbol.java
index 08f26c7..b8c8c54 100644 (file)
--- a/src/jalview/ext/ensembl/EnsemblSymbol.java
+++ b/src/jalview/ext/ensembl/EnsemblSymbol.java
@@ -25,11 +25,13 @@ public class EnsemblSymbol extends EnsemblXref
   /**
    * Constructor given the target domain to fetch data from
    * 
-   * @param d
+   * @param domain
+   * @param dbName
+   * @param dbVersion
    */
-  public EnsemblSymbol(String d)
+  public EnsemblSymbol(String domain, String dbName, String dbVersion)
   {
-    super(d);
+    super(domain, dbName, dbVersion);
   }
 
   /**
@@ -40,7 +42,7 @@ public class EnsemblSymbol extends EnsemblXref
    * @return
    * @throws IOException
    */
-  protected String parseResponse(BufferedReader br)
+  protected String parseSymbolResponse(BufferedReader br)
           throws IOException
   {
     JSONParser jp = new JSONParser();
@@ -108,7 +110,7 @@ public class EnsemblSymbol extends EnsemblXref
             {
               br = getHttpResponse(url, ids);
             }
-            String geneId = parseResponse(br);
+            String geneId = parseSymbolResponse(br);
             if (geneId != null)
             {
               result.add(geneId);