+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.ext.ensembl;
import jalview.datamodel.AlignmentI;
if (url != null)
{
br = getHttpResponse(url, ids);
+ if (br != null)
+ {
+ result = parseResponse(br);
+ }
}
- return (parseResponse(br));
} catch (IOException e)
{
// ignore
while (rvals.hasNext())
{
JSONObject val = (JSONObject) rvals.next();
- String dbName = val.get("dbname").toString();
- if (dbName.equals(GO_GENE_ONTOLOGY))
+ String dbname = val.get("dbname").toString();
+ if (GO_GENE_ONTOLOGY.equals(dbname))
{
continue;
}
String id = val.get("primary_id").toString();
- if (dbName != null && id != null)
+ if (dbname != null && id != null)
{
- dbName = DBRefUtils.getCanonicalName(dbName);
- DBRefEntry dbref = new DBRefEntry(dbName, getXRefVersion(), id);
+ dbname = DBRefUtils.getCanonicalName(dbname);
+ DBRefEntry dbref = new DBRefEntry(dbname, getXRefVersion(), id);
result.add(dbref);
}
}