*/
package jalview.ext.ensembl;
+import java.util.HashSet;
+import java.util.Set;
+
/**
* Selected species identifiers used by Ensembl
*
* valid species parameters to Ensembl REST services where applicable
*/
human(true), mouse(true), s_cerevisiae(true), cow(false), pig(false),
- rat(true), celegans(true), sheep(false), horse(false), gorilla(false),
- rabbit(false), gibbon(false), dog(false), orangutan(false), xenopus(true),
- chimpanzee(false), cat(false), zebrafish(true), chicken(true),
- dmelanogaster(true);
+ rattus_norvegicus(true), celegans(true), sheep(false), horse(false),
+ gorilla(false), rabbit(false), gibbon(false), dog(false),
+ orangutan(false), xenopus_tropicalis(true), chimpanzee(false), cat(false),
+ zebrafish(true), chicken(true), drosophila_melanogaster(true);
+
+ static Set<Species> modelOrganisms = new HashSet<>();
+
+ static
+ {
+ for (Species s : values())
+ {
+ if (s.isModelOrganism())
+ {
+ modelOrganisms.add(s);
+ }
+ }
+ }
boolean modelOrganism;
{
return modelOrganism;
}
+
+ public static Set<Species> getModelOrganisms()
+ {
+ return modelOrganisms;
+ }
}