package jalview.ext.forester;
+import jalview.datamodel.Sequence;
import jalview.datamodel.SequenceI;
import jalview.math.MatrixI;
import org.forester.evoinference.matrix.distance.DistanceMatrix;
import org.forester.io.parsers.phyloxml.PhyloXmlDataFormatException;
+import org.forester.phylogeny.PhylogenyNode;
public final class DataConversions
{
}
+ public static SequenceI createJalviewSequence(
+ PhylogenyNode foresterNode)
+ {
+ String seq = foresterNode.getNodeData().getSequence()
+ .getMolecularSequence();
+ String seqName = foresterNode.getName();
+
+ SequenceI jalviewSeq = new Sequence(foresterNode.getName(), seq, 1,
+ seq.length() + 1);
+ return jalviewSeq.deriveSequence();
+
+
+ }
+
// public static org.forester.phylogeny.data.Accession
// createForesterAccession(