{
foresterSeq.setName(jalviewSequence.getDescription());
}
- foresterSeq.setMolecularSequenceAligned(sequenceIsAligned); // all tree
- // sequences
- // should
- // be aligned
- // already
+
+ // all tree sequences should be aligned already
+ foresterSeq.setMolecularSequenceAligned(sequenceIsAligned);
+
foresterSeq.setMolecularSequence(jalviewSequence.getSequenceAsString());
- if (jalviewSequence.isProtein()) // add checks for DNA or RNA (infer from
- // forester itself?)
+
+ // add checks for DNA or RNA (infer from forester itself?)
+ if (jalviewSequence.isProtein())
{
try
{
return foresterMatrix;
}
+
+
}