JAL-2805 getNodeSequences returns a list now instead of array (size

[jalview.git] / src / jalview / ext / forester / io / PhyloXmlFile.java

diff --git a/src/jalview/ext/forester/io/PhyloXmlFile.java b/src/jalview/ext/forester/io/PhyloXmlFile.java
index e64845c..3cb3223 100644 (file)
--- a/src/jalview/ext/forester/io/PhyloXmlFile.java
+++ b/src/jalview/ext/forester/io/PhyloXmlFile.java
@@ -8,6 +8,7 @@ import jalview.io.FileParse;
 
 import java.io.File;
 import java.io.IOException;
+import java.util.List;
 
 public class PhyloXmlFile extends AlignFile
 {
@@ -30,7 +31,8 @@ public class PhyloXmlFile extends AlignFile
     TreeParserI parser = ForesterParser
             .createPhyloXmlParser(new File(getDataName()));
     TreeI[] trees = parser.parse();
-    for (SequenceI seq : trees[0].getNodeSequences())
+    List<SequenceI> treeSeqs = trees[0].getNodeSequences();
+    for (SequenceI seq : treeSeqs)
       {
         seqs.add(seq);
       }