import java.util.Vector;
import javax.swing.SwingUtilities;
-
import org.jmol.adapter.smarter.SmarterJmolAdapter;
import org.jmol.api.JmolAppConsoleInterface;
import org.jmol.api.JmolSelectionListener;
import jalview.structures.models.AAStructureBindingModel;
import jalview.ws.dbsources.Pdb;
import javajs.util.BS;
-
public abstract class JalviewJmolBinding extends AAStructureBindingModel
implements JmolStatusListener, JmolSelectionListener,
ComponentListener
{
private String lastMessage;
+
/*
* when true, try to search the associated datamodel for sequences that are
* associated with any unknown structures in the Jmol view.
{
return null;
}
+
String cmd = command.getCommand();
jmolHistory(false);
if (lastCommand == null || !lastCommand.equals(cmd))
return null;
}
+
/**
* map between index of model filename returned from getPdbFile and the first
* index of models from this file in the viewer. Note - this is not trimmed -
jmolScript(cmd.toString());
jmolHistory(true);
+
}
private boolean debug = true;
setLoadingFromArchive(false);
}
+
protected IProgressIndicator getIProgressIndicator()
{
return null;
}
+
public void showHelp()
{
showUrl("http://wiki.jmol.org"