refactor to send list of model filenames involved in each set of Jmol

[jalview.git] / src / jalview / ext / jmol / JalviewJmolBinding.java

diff --git a/src/jalview/ext/jmol/JalviewJmolBinding.java b/src/jalview/ext/jmol/JalviewJmolBinding.java
index 6747349..da514a2 100644 (file)
--- a/src/jalview/ext/jmol/JalviewJmolBinding.java
+++ b/src/jalview/ext/jmol/JalviewJmolBinding.java
@@ -570,7 +570,8 @@ public abstract class JalviewJmolBinding implements StructureListener,
     }\r
     AlignmentI alignment = alignmentv.getAlignment();\r
 \r
-    for (String cbyseq : JmolCommands.getColourBySequenceCommand(ssm, files, sequence, sr, fr, alignment)) {\r
+    for (jalview.structure.StructureMappingcommandSet cpdbbyseq: JmolCommands.getColourBySequenceCommand(ssm, files, sequence, sr, fr, alignment))\r
+      for (String cbyseq : cpdbbyseq.commands) {\r
       evalStateCommand(cbyseq);\r
     }\r
   }\r