import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.Annotation;
import jalview.datamodel.SequenceI;
+import jalview.io.DataSourceType;
import jalview.io.FileParse;
import jalview.io.StructureFile;
import jalview.schemes.ResidueProperties;
Viewer viewer = null;
public JmolParser(boolean addAlignmentAnnotations, boolean predictSecStr,
- boolean externalSecStr, String inFile, String type)
+ boolean externalSecStr, String inFile, DataSourceType sourceType)
throws IOException
{
- super(inFile, type);
+ super(inFile, sourceType);
}
public JmolParser(boolean addAlignmentAnnotations, boolean predictSecStr,
* Not implemented - returns null
*/
@Override
- public String print()
+ public String print(SequenceI[] seqs, boolean jvSuffix)
{
return null;
}