import jalview.datamodel.Annotation;
import jalview.datamodel.PDBEntry;
import jalview.datamodel.SequenceI;
+import jalview.io.DataSourceType;
import jalview.io.FileParse;
import jalview.io.StructureFile;
import jalview.schemes.ResidueProperties;
{
Viewer viewer = null;
- public JmolParser(String inFile, String type) throws IOException
+ public JmolParser(String inFile, DataSourceType sourceType)
+ throws IOException
{
- super(inFile, type);
+ super(inFile, sourceType);
}
public JmolParser(FileParse fp) throws IOException
makeResidueList();
makeCaBondList();
+ if (getId() == null)
+ {
+ // always use resource name, not the hardwired file
+ // Does the value of ID get used ? Behaviour needs to be
+ // documented and tested
+ setId(getDataName());
+ }
+
for (PDBChain chain : getChains())
{
SequenceI chainseq = postProcessChain(chain);
* Not implemented - returns null
*/
@Override
- public String print()
+ public String print(SequenceI[] seqs, boolean jvSuffix)
{
return null;
}