import java.io.IOException;
import java.util.Map;
-import javax.xml.parsers.ParserConfigurationException;
-
import org.jmol.api.JmolStatusListener;
import org.jmol.api.JmolViewer;
import org.jmol.constant.EnumCallback;
-import org.jmol.constant.EnumStructure;
-import org.jmol.modelset.Chain;
import org.jmol.modelset.Group;
import org.jmol.modelset.Model;
import org.jmol.modelset.ModelSet;
import org.jmol.modelsetbio.BioPolymer;
import org.jmol.viewer.Viewer;
import org.openscience.jmol.app.JmolApp;
-import org.xml.sax.SAXException;
-import fr.orsay.lri.varna.exceptions.ExceptionFileFormatOrSyntax;
-import fr.orsay.lri.varna.exceptions.ExceptionLoadingFailed;
-import fr.orsay.lri.varna.exceptions.ExceptionPermissionDenied;
-import fr.orsay.lri.varna.exceptions.ExceptionUnmatchedClosingParentheses;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.Annotation;
import jalview.datamodel.PDBEntry;
Viewer viewer = null;
public PDBFileWithJmol(String inFile, String type)
- throws ExceptionUnmatchedClosingParentheses, IOException,
- ExceptionFileFormatOrSyntax, ParserConfigurationException,
- SAXException, ExceptionPermissionDenied, ExceptionLoadingFailed,
- InterruptedException
+ throws IOException
{
super(inFile, type);
}
* @see jalview.io.AlignFile#parse()
*/
@Override
- public void parse() throws IOException, ExceptionFileFormatOrSyntax,
- ParserConfigurationException, SAXException,
- ExceptionPermissionDenied, ExceptionLoadingFailed,
- InterruptedException, ExceptionUnmatchedClosingParentheses
+ public void parse() throws IOException
{
Viewer jmd = getJmolData();
jmd.openReader(getDataName(), getDataName(), getReader());