newseq[p] = cinds[seq[p]] == nonGap ? ngc : seq[p];
if (secstr[p] >= 'A' && secstr[p] <= 'z')
{
- asecstr[p] = new Annotation("" + secstr[p], null,
- secstrcode[p], Float.NaN);
+ try
+ {
+ asecstr[p] = new Annotation("" + secstr[p], null,
+ secstrcode[p], Float.NaN);
+ } catch (ArrayIndexOutOfBoundsException e)
+ {
+ // skip - patch for JAL-1836
+ }
}
}
String modelTitle = (String) ms