/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
null, "-x -o -n", this);
} catch (ClassCastException x)
{
- throw new Error(MessageManager.formatMessage("error.jmol_version_not_compatible_with_jalview_version", new String[]{JmolViewer.getJmolVersion()}),
- x);
+ throw new Error(MessageManager.formatMessage(
+ "error.jmol_version_not_compatible_with_jalview_version",
+ new String[] { JmolViewer.getJmolVersion() }), x);
}
}
return viewer;
* equivalent (e.g. MSE with MET->M) to maximise sequence matching
*/
String threeLetterCode = group.getGroup3();
- String canonical = ResidueProperties.getCanonicalAminoAcid(threeLetterCode);
+ String canonical = ResidueProperties
+ .getCanonicalAminoAcid(threeLetterCode);
if (canonical != null
&& !canonical.equalsIgnoreCase(threeLetterCode))
{