JAL-2422 tidy of methods and parameters

[jalview.git] / src / jalview / ext / rbvi / chimera / JalviewChimeraBinding.java

diff --git a/src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java b/src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
index 0192993..9695eae 100644 (file)
--- a/src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
+++ b/src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
@@ -673,18 +673,6 @@ public abstract class JalviewChimeraBinding extends AAStructureBindingModel
     }
   }
 
-  // End StructureListener
-  // //////////////////////////
-
-  /**
-   * map between index of model filename returned from getPdbFile and the first
-   * index of models from this file in the viewer. Note - this is not trimmed -
-   * use getPdbFile to get number of unique models.
-   */
-  private int _modelFileNameMap[];
-
-  // ////////////////////////////////
-  // /StructureListener
   @Override
   public synchronized String[] getStructureFiles()
   {
@@ -941,8 +929,6 @@ public abstract class JalviewChimeraBinding extends AAStructureBindingModel
   public int sendFeaturesToViewer(AlignmentViewPanel avp)
   {
     // TODO refactor as required to pull up to an interface
-    AlignmentI alignment = avp.getAlignment();
-
     String[] files = getStructureFiles();
     if (files == null)
     {