JAL-1953 first pass of adding javadoc, some methods renamed

[jalview.git] / src / jalview / ext / treeviewer / TreePanelI.java

diff --git a/src/jalview/ext/treeviewer/TreePanelI.java b/src/jalview/ext/treeviewer/TreePanelI.java
index e0612d0..e3d5800 100644 (file)
--- a/src/jalview/ext/treeviewer/TreePanelI.java
+++ b/src/jalview/ext/treeviewer/TreePanelI.java
@@ -14,27 +14,25 @@ public interface TreePanelI extends Accessible, MenuContainer
 {
 
 
-  public abstract void setTreeFile(File file);
-
-  public abstract File getTreeFile();
-
-  public abstract TreeI getTree();
+  public void addMouseListener(MouseListener listener);
 
   public abstract TreeNodeI findNode(int x, int y);
 
-  public abstract void setMatchingNodes(Set<Long> matchingNodes);
+  public int getHeight();
 
   public abstract Set<Long> getMatchingNodes();
 
-  public void addMouseListener(MouseListener listener);
+  public MouseListener[] getMouseListeners();
 
-  public void removeMouseListener(MouseListener listener);
+  public float getPartitionThreshold();
 
-  public MouseListener[] getMouseListeners();
+  public abstract TreeI getTree();
 
-  public void repaint();
+  public abstract File getTreeFile();
 
-  public void registerWithPaintRefresher(String sequenceSetIdentifier);
+  public abstract Rectangle getVisibleArea();
+
+  public int getWidth();
 
   public void notifyPaintRefresher(boolean alignmentChanged,
           boolean validateSequences);
@@ -42,22 +40,24 @@ public interface TreePanelI extends Accessible, MenuContainer
   public void notifyPaintRefresher(String newSeqSetIdentifier,
           boolean alignmentChanged, boolean validateSequences);
 
-  public int getWidth();
-
-  public int getHeight();
-
   public abstract void paintToFile(Graphics2D pg, int width, int height);
 
-  public boolean showingSubTree();
+  public void registerWithPaintRefresher(String sequenceSetIdentifier);
 
-  public float getPartitionThreshold();
+  public void removeMouseListener(MouseListener listener);
 
-  public abstract Rectangle getVisibleArea();
+  public void repaint();
 
-  public void setMinimumSize(Dimension minimumSize);
+  public abstract void setMatchingNodes(Set<Long> matchingNodes);
 
   public void setMaximumSize(Dimension maximumSize);
 
+  public void setMinimumSize(Dimension minimumSize);
+
   public void setPreferredSize(Dimension preferredSize);
 
+  public abstract void setTreeFile(File file);
+
+  public boolean showingSubTree();
+
 }