{
private static Map<TreeFrameI, TreeViewerBindingI> activeViews = new HashMap<>();
- public static TreeViewerBindingI associateNodesWithJalviewSequences(
- final TreeFrameI treeFrame,
- final AlignmentViewport jalviewAlignViewport,
- final Map<SequenceI, TreeNodeI> alignMappedToNodes,
- final Map<TreeNodeI, SequenceI> nodesMappedToAlign)
- {
- TreeViewerBindingI treeBinding = new JalviewBinding(treeFrame,
- jalviewAlignViewport,
- alignMappedToNodes, nodesMappedToAlign);
- jalviewAlignViewport.setCurrentExtTree(treeFrame.getTree());
- activeViews.put(treeFrame, treeFrame.getViewBinding());
-
- return treeBinding;
- }
-
public static TreeFrameI addTreeViewFrameToJalview(
final TreeFrameI treeFrame)
{
treeFrame.addFrameToJalview(frameTitle, true, width, height, true,
false);
+ treeFrame.getTreeControls().displayEntireTree();
return treeFrame;
}
+ public static TreeViewerBindingI associateNodesWithJalviewSequences(
+ final TreeFrameI treeFrame,
+ final AlignmentViewport jalviewAlignViewport,
+ final Map<SequenceI, TreeNodeI> alignMappedToNodes,
+ final Map<TreeNodeI, SequenceI> nodesMappedToAlign)
+ {
+ TreeViewerBindingI treeBinding = new JalviewBinding(treeFrame,
+ jalviewAlignViewport,
+ alignMappedToNodes, nodesMappedToAlign);
+ jalviewAlignViewport.setCurrentExtTree(treeFrame.getTree());
+ activeViews.put(treeFrame, treeFrame.getViewBinding());
+
+ return treeBinding;
+ }
+
public static Map<TreeFrameI, TreeViewerBindingI> getActiveTreeViews()
{
return activeViews;