import jalview.gui.SequenceFetcher;
import jalview.util.MessageManager;
+import java.util.HashMap;
import java.util.HashSet;
-
-import javax.swing.table.DefaultTableModel;
+import java.util.Map;
@SuppressWarnings("serial")
public class PDBFTSPanel extends GFTSPanel
{
+ private static String defaultFTSFrameTitle = MessageManager
+ .getString("label.pdb_sequence_fetcher");
+
+ private String ftsFrameTitle = defaultFTSFrameTitle;
+
+ private static Map<String, Integer> tempUserPrefs = new HashMap<String, Integer>();
public PDBFTSPanel(SequenceFetcher seqFetcher)
{
+ super();
+ pageLimit = PDBFTSRestClient.getInstance().getDefaultResponsePageSize();
this.seqFetcher = seqFetcher;
- this.progressIdicator = (seqFetcher == null) ? null : seqFetcher
+ this.progressIndicator = (seqFetcher == null) ? null : seqFetcher
.getProgressIndicator();
}
-
- /**
- * Action performed when an input is detected on txt_search field.
- */
@Override
- public void txt_search_ActionPerformed()
+ public void searchAction(boolean isFreshSearch)
{
+ if (isFreshSearch)
+ {
+ offSet = 0;
+ }
new Thread()
{
@Override
public void run()
{
- lbl_loading.setVisible(false);
- errorWarning.setLength(0);
- lbl_warning.setVisible(false);
- btn_ok.setEnabled(false);
+ ftsFrameTitle = defaultFTSFrameTitle;
+ reset();
boolean allowEmptySequence = false;
- mainFrame.setTitle(getFTSFrameTitle());
- tbl_summary.setModel(new DefaultTableModel());
- tbl_summary.setVisible(false);
- if (txt_search.getText().trim().length() > 0)
+ if (getTypedText().length() > 0)
{
- lbl_loading.setVisible(true);
+ setSearchInProgress(true);
long startTime = System.currentTimeMillis();
String searchTarget = ((FTSDataColumnI) cmb_searchTarget
.getSelectedItem()).getCode();
-
- // wantedFields = FTSDataColumnPreferences.getSearchSummaryFields();
wantedFields = PDBFTSRestClient.getInstance()
- .getAllDefaulDisplayedDataColumns();
+ .getAllDefaultDisplayedFTSDataColumns();
String searchTerm = decodeSearchTerm(txt_search.getText(),
searchTarget);
request.setResponseSize(100);
request.setFieldToSearchBy("(" + searchTarget + ":");
request.setSearchTerm(searchTerm + ")");
+ request.setOffSet(offSet);
request.setWantedFields(wantedFields);
- // System.out.println(">>>>>>>>>>>>>> " + request.getQuery());
FTSRestClientI pdbRestCleint = PDBFTSRestClient.getInstance();
FTSRestResponse resultList;
try
resultList = pdbRestCleint.executeRequest(request);
} catch (Exception e)
{
- // e.printStackTrace();
- errorWarning.append(e.getMessage());
+ setErrorMessage(e.getMessage());
checkForErrors();
return;
}
- if (resultList.getSearchSummary() != null)
+ if (resultList.getSearchSummary() != null
+ && resultList.getSearchSummary().size() > 0)
{
- tbl_summary.setModel(FTSRestResponse.getTableModel(request,
- resultList.getSearchSummary()));
- FTSRestResponse.configureTableColumn(tbl_summary, wantedFields);
- tbl_summary.setVisible(true);
+ getResultTable().setModel(
+ FTSRestResponse.getTableModel(request,
+ resultList.getSearchSummary()));
+ FTSRestResponse.configureTableColumn(getResultTable(),
+ wantedFields, tempUserPrefs);
+ getResultTable().setVisible(true);
}
-
long endTime = System.currentTimeMillis();
- int resultSetCount = resultList.getNumberOfItemsFound();
- String result = (resultSetCount > 1) ? MessageManager
+ totalResultSetCount = resultList.getNumberOfItemsFound();
+ resultSetCount = resultList.getSearchSummary() == null ? 0
+ : resultList.getSearchSummary().size();
+ String result = (resultSetCount > 0) ? MessageManager
.getString("label.results") : MessageManager
.getString("label.result");
- mainFrame.setTitle(getFTSFrameTitle() + " - " + resultSetCount
- + " "
- + result + " (" + (endTime - startTime) + " milli secs)");
- lbl_loading.setVisible(false);
+
+ if (isPaginationEnabled() && resultSetCount > 0)
+ {
+ updateSearchFrameTitle(defaultFTSFrameTitle
+ + " - "
+ + result
+ + " "
+ + totalNumberformatter.format((Number) (offSet + 1))
+ + " to "
+ + totalNumberformatter
+ .format((Number) (offSet + resultSetCount))
+ + " of "
+ + totalNumberformatter
+ .format((Number) totalResultSetCount) + " "
+ + " (" + (endTime - startTime) + " milli secs)");
+ }
+ else
+ {
+ updateSearchFrameTitle(defaultFTSFrameTitle + " - "
+ + resultSetCount + " " + result + " ("
+ + (endTime - startTime) + " milli secs)");
+ }
+
+ setSearchInProgress(false);
+ refreshPaginatorState();
+ updateSummaryTableSelections();
}
}
}.start();
}
@Override
- public void btn_ok_ActionPerformed()
+ public void okAction()
{
// mainFrame.dispose();
disableActionButtons();
StringBuilder selectedIds = new StringBuilder();
HashSet<String> selectedIdsSet = new HashSet<String>();
- int pdbIdCol = 0;
+ int primaryKeyColIndex = 0;
try
{
- pdbIdCol = getFTSRestClient().getPrimaryKeyColumIndex(wantedFields,
- false);
+ primaryKeyColIndex = getFTSRestClient().getPrimaryKeyColumIndex(
+ wantedFields, false);
} catch (Exception e)
{
- // TODO Auto-generated catch block
e.printStackTrace();
}
- int[] selectedRows = tbl_summary.getSelectedRows();
+ int[] selectedRows = getResultTable().getSelectedRows();
+ String searchTerm = txt_search.getText();
for (int summaryRow : selectedRows)
{
- String idStr = tbl_summary.getValueAt(summaryRow, pdbIdCol)
- .toString();
- String searchTerm = txt_search.getText();
+ String idStr = getResultTable().getValueAt(summaryRow,
+ primaryKeyColIndex).toString();
+ selectedIdsSet.add(getPDBIdwithSpecifiedChain(idStr, searchTerm));
+ }
+
+ for (String idStr : paginatorCart)
+ {
selectedIdsSet.add(getPDBIdwithSpecifiedChain(idStr, searchTerm));
}
delayAndEnableActionButtons();
}
-
public static String getPDBIdwithSpecifiedChain(String pdbId,
String searchTerm)
{
return pdbIdWithChainCode;
}
-
-
@Override
public FTSRestClientI getFTSRestClient()
{
@Override
public String getFTSFrameTitle()
{
- return MessageManager.getString("label.pdb_sequence_fetcher");
+ return ftsFrameTitle;
+ }
+
+ @Override
+ public boolean isPaginationEnabled()
+ {
+ return true;
+ }
+
+ @Override
+ public Map<String, Integer> getTempUserPrefs()
+ {
+ return tempUserPrefs;
}
}