import jalview.gui.SequenceFetcher;
import jalview.util.MessageManager;
+import java.util.HashMap;
import java.util.HashSet;
+import java.util.Map;
@SuppressWarnings("serial")
public class UniprotFTSPanel extends GFTSPanel
private static String defaultFTSFrameTitle = MessageManager
.getString("label.uniprot_sequence_fetcher");
- private String ftsFrameTitle = defaultFTSFrameTitle;
+ private static Map<String, Integer> tempUserPrefs = new HashMap<String, Integer>();
+
+ private static final String UNIPROT_FTS_CACHE_KEY = "CACHE.UNIPROT_FTS";
public UniprotFTSPanel(SequenceFetcher seqFetcher)
{
+ super();
+ pageLimit = UniProtFTSRestClient.getInstance()
+ .getDefaultResponsePageSize();
this.seqFetcher = seqFetcher;
- this.progressIdicator = (seqFetcher == null) ? null : seqFetcher
- .getProgressIndicator();
+ this.progressIndicator = (seqFetcher == null) ? null
+ : seqFetcher.getProgressIndicator();
}
@Override
- public void searchAction()
+ public void searchAction(boolean isFreshSearch)
{
+ mainFrame.requestFocusInWindow();
+ if (isFreshSearch)
+ {
+ offSet = 0;
+ }
new Thread()
- {
+ {
@Override
public void run()
{
- ftsFrameTitle = defaultFTSFrameTitle;
reset();
- if (getTypedText().length() > 0)
+ String searchInput = getTypedText();
+ if (searchInput.length() > 0)
{
setSearchInProgress(true);
long startTime = System.currentTimeMillis();
-
+ searchInput = getTypedText();
String searchTarget = ((FTSDataColumnI) cmb_searchTarget
- .getSelectedItem()).getCode();
-
+ .getSelectedItem()).getAltCode();
wantedFields = UniProtFTSRestClient.getInstance()
- .getAllDefaulDisplayedDataColumns();
- String searchTerm = txt_search.getText();
+ .getAllDefaultDisplayedFTSDataColumns();
+ String searchTerm = decodeSearchTerm(searchInput, searchTarget);
FTSRestRequest request = new FTSRestRequest();
request.setFieldToSearchBy(searchTarget);
request.setSearchTerm(searchTerm);
+ request.setOffSet(offSet);
request.setWantedFields(wantedFields);
FTSRestClientI uniProtRestCleint = UniProtFTSRestClient
.getInstance();
if (resultList.getSearchSummary() != null
&& resultList.getSearchSummary().size() > 0)
{
- getResultTable().setModel(
- FTSRestResponse.getTableModel(request,
+ getResultTable().setModel(FTSRestResponse.getTableModel(request,
resultList.getSearchSummary()));
FTSRestResponse.configureTableColumn(getResultTable(),
- wantedFields);
+ wantedFields, tempUserPrefs);
getResultTable().setVisible(true);
}
long endTime = System.currentTimeMillis();
- int resultSetCount = resultList.getNumberOfItemsFound();
- String result = (resultSetCount > 1) ? MessageManager
- .getString("label.results") : MessageManager
- .getString("label.result");
- updateSearchFrameTitle(defaultFTSFrameTitle + " - "
- + resultSetCount + " " + result + " ("
- + (endTime - startTime) + " milli secs)");
+ totalResultSetCount = resultList.getNumberOfItemsFound();
+ resultSetCount = resultList.getSearchSummary() == null ? 0
+ : resultList.getSearchSummary().size();
+ String result = (resultSetCount > 0)
+ ? MessageManager.getString("label.results")
+ : MessageManager.getString("label.result");
+ if (isPaginationEnabled() && resultSetCount > 0)
+ {
+ updateSearchFrameTitle(defaultFTSFrameTitle + " - " + result
+ + " "
+ + totalNumberformatter.format((Number) (offSet + 1))
+ + " to "
+ + totalNumberformatter
+ .format((Number) (offSet + resultSetCount))
+ + " of "
+ + totalNumberformatter
+ .format((Number) totalResultSetCount)
+ + " " + " (" + (endTime - startTime) + " milli secs)");
+ }
+ else
+ {
+ updateSearchFrameTitle(defaultFTSFrameTitle + " - "
+ + resultSetCount + " " + result + " ("
+ + (endTime - startTime) + " milli secs)");
+ }
setSearchInProgress(false);
+ refreshPaginatorState();
+ updateSummaryTableSelections();
}
+ txt_search.updateCache();
}
}.start();
}
+ public String decodeSearchTerm(String enteredText, String targetField)
+ {
+ int searchTargetLength = targetField.equalsIgnoreCase("Search All") ? 0
+ : targetField.length() + 1;
+ String searchTarget = targetField.equalsIgnoreCase("Search All") ? ""
+ : targetField + ":";
+ String foundSearchTerms = enteredText;
+ StringBuilder foundSearchTermsBuilder = new StringBuilder();
+ if (enteredText.contains(";"))
+ {
+ String[] searchTerms = enteredText.split(";");
+ for (String searchTerm : searchTerms)
+ {
+ foundSearchTermsBuilder.append(searchTarget).append(searchTerm)
+ .append(" OR ");
+ }
+ int endIndex = foundSearchTermsBuilder.lastIndexOf(" OR ");
+ foundSearchTerms = foundSearchTermsBuilder.toString();
+ if (foundSearchTerms.contains(" OR "))
+ {
+ foundSearchTerms = foundSearchTerms.substring(searchTargetLength,
+ endIndex);
+ }
+ }
+ return foundSearchTerms;
+ }
+
+ @Override
+ public boolean isPaginationEnabled()
+ {
+ return true;
+ }
+
@Override
public void okAction()
{
int primaryKeyColIndex = 0;
try
{
- primaryKeyColIndex = getFTSRestClient().getPrimaryKeyColumIndex(
- wantedFields, false);
+ primaryKeyColIndex = getFTSRestClient()
+ .getPrimaryKeyColumIndex(wantedFields, false);
} catch (Exception e)
{
e.printStackTrace();
int[] selectedRows = getResultTable().getSelectedRows();
for (int summaryRow : selectedRows)
{
- String idStr = getResultTable().getValueAt(summaryRow,
- primaryKeyColIndex).toString();
+ String idStr = getResultTable()
+ .getValueAt(summaryRow, primaryKeyColIndex).toString();
selectedIdsSet.add(idStr);
}
-
+ selectedIdsSet.addAll(paginatorCart);
for (String selectedId : selectedIdsSet)
{
selectedIds.append(selectedId).append(";");
@Override
public String getFTSFrameTitle()
{
- return ftsFrameTitle;
+ return defaultFTSFrameTitle;
+ }
+
+ @Override
+ public Map<String, Integer> getTempUserPrefs()
+ {
+ return tempUserPrefs;
}
+ @Override
+ public String getCacheKey()
+ {
+ return UNIPROT_FTS_CACHE_KEY;
+ }
}