+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.gui;
import jalview.api.AlignExportSettingI;
+import jalview.api.AlignViewportI;
import jalview.bin.Jalview;
+import jalview.datamodel.AlignExportSettingBeanI;
+import jalview.datamodel.AlignmentExportData;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.HiddenSequences;
+import jalview.io.FileFormatI;
import jalview.jbgui.GAlignExportSettings;
+import jalview.util.MessageManager;
+import jalview.util.dialogrunner.RunResponse;
import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
-import javax.swing.JDialog;
-import javax.swing.JInternalFrame;
import javax.swing.JOptionPane;
@SuppressWarnings("serial")
-public class AlignExportSettings extends GAlignExportSettings implements
- AlignExportSettingI
+public class AlignExportSettings extends GAlignExportSettings
+ implements AlignExportSettingI
{
- protected JInternalFrame frame;
-
boolean cancelled = false;
- JDialog dialog;
+ JvOptionPane dialog;
+
+ AlignmentPanel alignPanel;
+
+ /**
+ * settings provided at construction override the GUI
+ */
+ AlignExportSettingBeanI override=null;
- public AlignExportSettings(boolean hasHiddenSeq, boolean hasHiddenCols,
- String alignFileFormat)
+ public AlignExportSettings(AlignmentPanel alignmentPanel,
+ FileFormatI format, AlignExportSettingBeanI exportSettings)
+ {
+ super(alignmentPanel.getAlignViewport().hasHiddenRows(),
+ alignmentPanel.getAlignViewport().hasHiddenColumns(), format);
+ this.alignPanel = alignmentPanel;
+ override = exportSettings;
+ }
+
+ /**
+ * @param viewport
+ * @return a bean with data for export
+ */
+ @Override
+ public AlignmentExportData getAlignExportData()
{
- super(hasHiddenSeq, hasHiddenCols, alignFileFormat);
- if (!Jalview.isHeadlessMode() && isShowDialog())
+ // settings.isExportAnnotations();
+
+ AlignmentI alignmentToExport = null;
+ String[] omitHidden = null;
+ AlignViewportI viewport = alignPanel.getAlignViewport();
+
+ alignmentToExport = viewport.getAlignment();
+
+ if (viewport.hasHiddenColumns() && !isExportHiddenColumns())
{
- JOptionPane pane = new JOptionPane(null, JOptionPane.DEFAULT_OPTION,
- JOptionPane.DEFAULT_OPTION, null, new Object[]
- { this });
- dialog = pane.createDialog(Desktop.desktop, "Export Settings");
- dialog.pack();
- dialog.setVisible(true);
- dialog.setContentPane(this);
- dialog.validate();
+ omitHidden = viewport.getViewAsString(false,
+ isExportHiddenSequences());
}
- }
+ int[] alignmentStartEnd = new int[2];
+ if (viewport.hasHiddenRows() && isExportHiddenSequences())
+ {
+ alignmentToExport = viewport.getAlignment().getHiddenSequences()
+ .getFullAlignment();
+ }
+ else
+ {
+ alignmentToExport = viewport.getAlignment();
+ }
+ alignmentStartEnd = viewport.getAlignment().getHiddenColumns()
+ .getVisibleStartAndEndIndex(alignmentToExport.getWidth());
+ AlignmentExportData ed = new AlignmentExportData(alignmentToExport,
+ omitHidden, alignmentStartEnd, this);
+ return ed;
+ }
+ @Override
public void ok_actionPerformed(ActionEvent e)
{
cancelled = false;
- dialog.setVisible(false);
}
+ @Override
public void cancel_actionPerformed(ActionEvent e)
{
cancelled = true;
- dialog.setVisible(false);
}
@Override
public boolean isExportHiddenSequences()
{
- return chkHiddenSeqs.isSelected();
+ return override!=null ? override.isExportHiddenSequences() : chkHiddenSeqs.isSelected();
}
@Override
public boolean isExportHiddenColumns()
{
- return chkHiddenCols.isSelected();
+ return override!=null ? override.isExportHiddenColumns() : chkHiddenCols.isSelected();
}
@Override
public boolean isExportAnnotations()
{
- return chkExportAnnots.isSelected();
+ return override!=null ? override.isExportAnnotations() : chkExportAnnots.isSelected();
}
@Override
public boolean isExportFeatures()
{
- return chkExportFeats.isSelected();
+ return override!=null ? override.isExportFeatures() : chkExportFeats.isSelected();
}
@Override
public boolean isExportGroups()
{
- return chkExportGrps.isSelected();
+ return override!=null ? override.isExportGroups() : chkExportGrps.isSelected();
}
+ @Override
public boolean isCancelled()
{
- return cancelled;
+ return override!=null ? override.isCancelled() : cancelled;
+ }
+
+ ActionListener afterShownAction = null;
+
+ @Override
+ public void addActionListener(ActionListener actionListener)
+ {
+ afterShownAction = actionListener;
+ }
+
+ @Override
+ public void doShowSettings()
+ {
+ if (!Jalview.isHeadlessMode() && override==null && isShowDialog())
+ {
+
+ dialog = JvOptionPane.newOptionDialog(alignPanel);
+
+ dialog.response(new RunResponse(JvOptionPane.OK_OPTION)
+ {
+ public void run()
+ {
+ ok_actionPerformed(null);
+ afterShownAction.actionPerformed(null);
+ }
+ }).defaultResponse(new Runnable()
+ {
+ @Override
+ public void run()
+ {
+ cancelled=true;
+ afterShownAction.actionPerformed(null);
+ }
+ });
+ String ok = MessageManager.getString("action.ok"),
+ cancel = MessageManager.getString("action.cancel");
+ dialog.showInternalDialog(this,
+ MessageManager.getString("label.export_settings"),
+ JOptionPane.DEFAULT_OPTION, JvOptionPane.DEFAULT_OPTION, null,
+ new Object[]
+ { ok, cancel }, ok);
+ }
+ else
+ {
+ afterShownAction.actionPerformed(null);
+ }
}
}
git://source.jalview.org / jalview.git / blobdiff