JAL-2388 Working hidden regions hide/show in desktop

[jalview.git] / src / jalview / gui / AlignFrame.java

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 9cb9804..195dd67 100644 (file)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -1316,7 +1316,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     alignmentStartEnd = alignmentToExport
             .getVisibleStartAndEndIndex(viewport.getAlignment()
                     .getHiddenColumns()
-                    .getListOfCols());
+                    .getHiddenRegions());
     AlignmentExportData ed = new AlignmentExportData(alignmentToExport,
             omitHidden, alignmentStartEnd, settings);
     return ed;
@@ -1881,7 +1881,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
       int hiddenOffset = viewport.getSelectionGroup().getStartRes(), hiddenCutoff = viewport
               .getSelectionGroup().getEndRes();
       for (int[] region : viewport.getAlignment().getHiddenColumns()
-              .getListOfCols())
+              .getHiddenRegions())
       {
         if (region[0] >= hiddenOffset && region[1] <= hiddenCutoff)
         {