Consensus and conservation updated in threads

[jalview.git] / src / jalview / gui / AlignFrame.java

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 77f1e41..27503f9 100755 (executable)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -415,6 +415,9 @@ public class AlignFrame
       tabbedPane.addTab(ap.av.viewName==null?"Original":ap.av.viewName, ap);
     }
 
+    ap.av.updateConsensus(ap);
+    ap.av.updateConservation(ap);
+
 
     ap.av.addPropertyChangeListener(new PropertyChangeListener()
     {
@@ -1616,8 +1619,9 @@ public class AlignFrame
 
      if (av.hconsensus != null && av.autoCalculateConsensus)
      {
-       av.updateConsensus();
-       av.updateConservation();
+       av.updateConsensus(ap);
+       av.updateConservation(ap);
+       ap.annotationPanel.repaint();
      }
 
      resetAllColourSchemes();