public void removeRedundancyMenuItem_actionPerformed(ActionEvent e)
{
- RedundancyPanel sp = new RedundancyPanel(this, alignPanel);
+ RedundancyPanel sp = new RedundancyPanel(alignPanel,this);
JInternalFrame frame = new JInternalFrame();
frame.setContentPane(sp);
Desktop.addInternalFrame(frame, "Redundancy threshold selection", 400, 100, false);
public void pairwiseAlignmentMenuItem_actionPerformed(ActionEvent e)
{
- if(viewport.getSelectionGroup().getSize()<2)
+ if((viewport.getSelectionGroup()==null) ||
+ viewport.getSelectionGroup().getSize()<2)
JOptionPane.showInternalMessageDialog(this, "You must select at least 2 sequences.", "Invalid Selection", JOptionPane.WARNING_MESSAGE);
else
{
}
if (msa!=null) {
- jalview.ws.MsaWSClient ct = new jalview.ws.MsaWSClient("ClustalWS", title, msa, true, true);
+ jalview.ws.MsaWSClient ct = new jalview.ws.MsaWSClient("ClustalWS", title, msa, false, true);
}
}
}
if (msa!=null) {
- MsaWSClient ct = new jalview.ws.MsaWSClient("MuscleWS",title, msa, true, true);
+ MsaWSClient ct = new jalview.ws.MsaWSClient("MuscleWS",title, msa, false, true);
}
}
protected void LoadtreeMenuItem_actionPerformed(ActionEvent e) {