Merge branch 'features/JAL-2388OverviewWindow' into develop

[jalview.git] / src / jalview / gui / AlignFrame.java

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index ca37196..4073e3e 100644 (file)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -1325,7 +1325,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     alignmentStartEnd = alignmentToExport
             .getVisibleStartAndEndIndex(viewport.getAlignment()
                     .getHiddenColumns()
-                    .getListOfCols());
+                    .getHiddenRegions());
     AlignmentExportData ed = new AlignmentExportData(alignmentToExport,
             omitHidden, alignmentStartEnd, settings);
     return ed;
@@ -1890,7 +1890,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
       int hiddenOffset = viewport.getSelectionGroup().getStartRes(), hiddenCutoff = viewport
               .getSelectionGroup().getEndRes();
       for (int[] region : viewport.getAlignment().getHiddenColumns()
-              .getListOfCols())
+              .getHiddenRegions())
       {
         if (region[0] >= hiddenOffset && region[1] <= hiddenCutoff)
         {
@@ -3591,19 +3591,6 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     if (viewport.getSelectionGroup() != null
             && viewport.getSelectionGroup().getSize() > 0)
     {
-      if (viewport.getSelectionGroup().getSize() < 3)
-      {
-        JvOptionPane
-                .showMessageDialog(
-                        Desktop.desktop,
-                        MessageManager
-                                .getString("label.you_need_more_two_sequences_selected_build_tree"),
-                        MessageManager
-                                .getString("label.not_enough_sequences"),
-                        JvOptionPane.WARNING_MESSAGE);
-        return;
-      }
-
       SequenceGroup sg = viewport.getSelectionGroup();
 
       /* Decide if the selection is a column region */