import jalview.analysis.Dna;
import jalview.analysis.ParseProperties;
import jalview.analysis.SequenceIdMatcher;
-import jalview.api.AlignExportSettingI;
import jalview.api.AlignViewControllerGuiI;
import jalview.api.AlignViewControllerI;
import jalview.api.AlignViewportI;
{ 0, alignmentToExport.getWidth() - 1 };
boolean hasHiddenSeqs = hiddenSeqs.getSize() > 0;
- AlignExportSettingI settings = new AlignExportSettings(hasHiddenSeqs,
+ AlignExportSettings settings = new AlignExportSettings(hasHiddenSeqs,
viewport.hasHiddenColumns(), exportFomat);
settings.isExportAnnotations();
private int[] startEnd;
- private AlignExportSettingI settings;
+ private AlignExportSettings settings;
public ExportData(AlignmentI align, String[] ommit, int[] startEnd,
- AlignExportSettingI settings)
+ AlignExportSettings settings)
{
this.alignment = align;
this.omitHidden = ommit;
this.startEnd = startEnd;
}
- public AlignExportSettingI getSettings()
+ public AlignExportSettings getSettings()
{
return settings;
}
- public void setSettings(AlignExportSettingI settings)
+ public void setSettings(AlignExportSettings settings)
{
this.settings = settings;
}