JAL-1944 fix for visible seqs sometimes been replaced with hidden ones while exportin...

[jalview.git] / src / jalview / gui / AlignFrame.java

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index d9d5f27..895f2f6 100644 (file)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -1313,6 +1313,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
 
     if (viewport.hasHiddenColumns() && !settings.isExportHiddenColumns())
     {
+      viewport.setExportHiddenSeqs(settings.isExportHiddenSequences());
       omitHidden = viewport.getViewAsString(false);
     }