JAL-535 todo: refactor logic to desktop controller class

[jalview.git] / src / jalview / gui / AlignFrame.java

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 806ad66..8e4030d 100644 (file)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -795,7 +795,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
       public void internalFrameClosed(
               javax.swing.event.InternalFrameEvent evt)
       {
-        System.out.println("deregistering discoverer listener");
+        // System.out.println("deregistering discoverer listener");
         Desktop.instance.removeJalviewPropertyChangeListener("services",
                 thisListener);
         closeMenuItem_actionPerformed(true);
@@ -4534,8 +4534,8 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
         final List<JMenuItem> legacyItems = new ArrayList<JMenuItem>();
         try
         {
-          System.err.println("Building ws menu again "
-                  + Thread.currentThread());
+          // System.err.println("Building ws menu again "
+          // + Thread.currentThread());
           // TODO: add support for context dependent disabling of services based
           // on
           // alignment and current selection
@@ -4887,7 +4887,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
                 al.getCodonFrames().addAll(cf);
                 final StructureSelectionManager ssm = StructureSelectionManager
                         .getStructureSelectionManager(Desktop.instance);
-                ssm.addMappings(cf);
+                ssm.registerMappings(cf);
               }
               else
               {