Remove edit menu if no group defined

[jalview.git] / src / jalview / gui / AlignFrame.java

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 0d744d6..a73958d 100755 (executable)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -54,9 +54,6 @@ public class AlignFrame
   AlignmentPanel alignPanel;\r
   AlignViewport viewport;\r
 \r
-  Vector viewports = new Vector();\r
-  Vector alignPanels = new Vector();\r
-\r
   /** DOCUMENT ME!! */\r
   public String currentFileFormat = null;\r
   Stack historyList = new Stack();\r
@@ -72,7 +69,6 @@ public class AlignFrame
   public AlignFrame(AlignmentI al)\r
   {\r
     viewport = new AlignViewport(al);\r
-    viewports.add(viewport);\r
 \r
     this.setDropTarget(new java.awt.dnd.DropTarget(this, this));\r
 \r
@@ -88,7 +84,6 @@ public class AlignFrame
     }\r
 \r
     alignPanel = new AlignmentPanel(this, viewport);\r
-    alignPanels.add(alignPanel);\r
 \r
     String sortby = jalview.bin.Cache.getDefault("SORT_ALIGNMENT", "No sort");\r
 \r
@@ -1949,6 +1944,10 @@ public class AlignFrame
   public void autoCalculate_actionPerformed(ActionEvent e)\r
   {\r
     viewport.autoCalculateConsensus = autoCalculate.isSelected();\r
+    if(viewport.autoCalculateConsensus)\r
+    {\r
+      alignmentChanged();\r
+    }\r
   }\r
 \r
 \r