}
else
{
- sequences = new FormatAdapter().readFile(str, "Paste", format);
+ sequences = new FormatAdapter().readFile(str, "Paste", format).getSequencesArray();
}
AlignmentI alignment = null;
}
boolean isAnnotation = new AnnotationFile().readAnnotationFile(viewport.
- alignment, file);
+ alignment, file, protocol);
if (!isAnnotation)
{