final OverviewPanel overview = new OverviewPanel(alignPanel, frame,
showHidden);
frame.setContentPane(overview);
- Desktop.addInternalFrame(frame, "", true, frame.getWidth(),
- frame.getHeight(), true, true);
+
+ alignPanel.setOverviewPanel(overview);
+ alignPanel.setOverviewTitle(this);
+
+ Desktop.addInternalFrame(frame, overview.getTitle(), true,
+ frame.getWidth(), frame.getHeight(), true, true);
frame.pack();
frame.setLayer(JLayeredPane.PALETTE_LAYER);
final AlignmentPanel thePanel = this.alignPanel;
frame.addKeyListener(getKeyListeners()[0]);
}
- alignPanel.setOverviewPanel(overview);
- alignPanel.setOverviewTitle(this);
-
return overview;
}
}
mtch = idm.findAllIdMatches(pdbfn);
}
- FileFormatI type=null;
+ FileFormatI type = null;
if (mtch != null)
{
try
}
// File wasn't named like one of the sequences or wasn't a PDB
// file.
- filesnotmatched.add(new Object[] { file, protocol, type});
+ filesnotmatched.add(new Object[] { file, protocol, type });
}
}
int assocfiles = 0;
*/
for (Object[] o : filesmatched)
{
- filesnotmatched.add(new Object[] { o[0], o[1]});
+ filesnotmatched.add(new Object[] { o[0], o[1] });
}
}
}
}
for (Object[] fn : filesnotmatched)
{
- loadJalviewDataFile(fn[0], (DataSourceType) fn[1], (FileFormatI)fn[2], null);
+ loadJalviewDataFile(fn[0], (DataSourceType) fn[1],
+ (FileFormatI) fn[2], null);
}
}
}
}
alignPanel.validateAnnotationDimensions(true);
+ // TODO this triggers relayout of annotation panel - otherwise annotation
+ // label height is different to panel height
+ alignPanel.fontChanged();
alignPanel.alignmentChanged();
}