import jalview.api.AlignViewportI;
import jalview.api.AlignmentViewPanel;
import jalview.api.FeatureSettingsControllerI;
+import jalview.api.FeatureSettingsModelI;
import jalview.api.SplitContainerI;
import jalview.api.ViewStyleI;
import jalview.api.analysis.SimilarityParamsI;
addKeyListener();
- final List<AlignmentPanel> selviews = new ArrayList<>();
- final List<AlignmentPanel> origview = new ArrayList<>();
+ final List<AlignmentViewPanel> selviews = new ArrayList<>();
+ final List<AlignmentViewPanel> origview = new ArrayList<>();
final String menuLabel = MessageManager
.getString("label.copy_format_from");
ViewSelectionMenu vsel = new ViewSelectionMenu(menuLabel,
{
@Override
- public AlignmentPanel[] getAllAlignmentPanels()
+ public AlignmentViewPanel[] getAllAlignmentPanels()
{
origview.clear();
origview.add(alignPanel);
{
if (origview.size() > 0)
{
- final AlignmentPanel ap = origview.get(0);
+ final AlignmentViewPanel avp = origview.get(0);
/*
* Copy the ViewStyle of the selected panel to 'this one'.
.getAlignViewport().getCodingComplement() != null;
if (!fromSplitFrame)
{
- vs.setScaleProteinAsCdna(ap.getAlignViewport()
+ vs.setScaleProteinAsCdna(avp.getAlignViewport()
.getViewStyle().isScaleProteinAsCdna());
}
- ap.getAlignViewport().setViewStyle(vs);
+ avp.getAlignViewport().setViewStyle(vs);
/*
* Also rescale ViewStyle of SplitFrame complement if there is
* the whole ViewStyle (allow cDNA protein to have different
* fonts)
*/
- AlignViewportI complement = ap.getAlignViewport()
+ AlignViewportI complement = avp.getAlignViewport()
.getCodingComplement();
if (complement != null && vs.isScaleProteinAsCdna())
{
af.setMenusForViewport();
}
+ AlignmentPanel ap = (AlignmentPanel) avp;
ap.updateLayout();
ap.setSelected(true);
ap.alignFrame.setMenusForViewport();
-
}
}
});
@Override
public void setStatus(String text)
{
- statusBar.setText(text);
+ statusBar.setText(text == null || text.isEmpty() ? " " : text);
}
/*
PrintWriter out = new PrintWriter(
new FileWriter(backupfiles.getTempFilePath()));
- // TESTING code here
- boolean TESTING = true;
- if (TESTING)
- {
- out.print("; TESTSTART\n");
- int count = 20;
- for (int i = 0; i < count; i++)
- {
- // Thread.sleep(1000);
- out.println("; TEST: " + (count - 1 - i));
- }
- }
out.print(output);
- if (TESTING)
- {
- out.print("; TESTEND\n");
- }
out.close();
this.setTitle(file);
statusBar.setText(MessageManager.formatMessage(
newGraphGroups.add(q, null);
}
newGraphGroups.set(newann.graphGroup,
- new Integer(++fgroup));
+ Integer.valueOf(++fgroup));
}
newann.graphGroup = newGraphGroups.get(newann.graphGroup)
.intValue();
newGraphGroups.add(q, null);
}
newGraphGroups.set(newann.graphGroup,
- new Integer(++fgroup));
+ Integer.valueOf(++fgroup));
}
newann.graphGroup = newGraphGroups.get(newann.graphGroup)
.intValue();
protected void scaleAbove_actionPerformed(ActionEvent e)
{
viewport.setScaleAboveWrapped(scaleAbove.isSelected());
- // TODO: do we actually need to update overview for scale above change ?
+ alignPanel.updateLayout();
alignPanel.paintAlignment(true, false);
}
protected void scaleLeft_actionPerformed(ActionEvent e)
{
viewport.setScaleLeftWrapped(scaleLeft.isSelected());
+ alignPanel.updateLayout();
alignPanel.paintAlignment(true, false);
}
protected void scaleRight_actionPerformed(ActionEvent e)
{
viewport.setScaleRightWrapped(scaleRight.isSelected());
+ alignPanel.updateLayout();
alignPanel.paintAlignment(true, false);
}
@Override
public void finished()
{
+
+ for (FeatureSettingsModelI srcSettings : dbRefFetcher
+ .getFeatureSettingsModels())
+ {
+
+ alignPanel.av.mergeFeaturesStyle(srcSettings);
+ }
AlignFrame.this.setMenusForViewport();
}
});
@Override
public void finished()
{
+ FeatureSettingsModelI srcSettings = dassource[0]
+ .getFeatureColourScheme();
+ alignPanel.av.mergeFeaturesStyle(
+ srcSettings);
AlignFrame.this.setMenusForViewport();
}
});